PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29794.m003304
Common NameRCOM_0797260
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 446aa    MW: 49419.8 Da    PI: 9.3667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29794.m003304genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.6e-052547123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  29794.m003304 25 FICEICNKGFQRDQNLQLHRRGH 47
                   89*******************88 PP

2zf-C2H212.70.00039101123123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC++C+k++  +s+ k H + +
  29794.m003304 101 WKCEKCSKRYAVQSDWKAHSKIC 123
                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-52447IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-72447No hitNo description
PfamPF121715.2E-52547IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0222547IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8452547IPR007087Zinc finger, C2H2
PROSITE patternPS0002802747IPR007087Zinc finger, C2H2
SMARTSM003552306696IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-489122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.29E-796121No hitNo description
SMARTSM00355130101121IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGFGADPDAE VIALSPKTLM ATNRFICEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTNKE  60
VRKKVYVCPE TTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKRY AVQSDWKAHS  120
KICGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAI TLNPLLASQQ QQPSSSASHH  180
MINLQSLSSS VKREQDQNHH LFSPRPDHHN VPPWLGEAAV GPGPLLPQQI SNLSSQLIPS  240
NLDRRHHPFL QHNENPSPNP NNLTLPPYPP HTASPHMSAT ALLQKAAQMG VTISKPSPSP  300
AAAAAVMLRP HQQAHMSVNT AGFSSTSVVA TSAAGNTSGL RLSSREDIRS GFGHGLTSFG  360
NKATATSGII DHHQMATDSS LVHDMMNFDE DFNGMLNPKR DVIAALGRLN SCSTTNYGQQ  420
QNHNQSPLAS LWWDDLPRLG FFILKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-3597163369Zinc finger protein JACKDAW
5b3h_F1e-3597163369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15163KLKQRTNKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29794.m003304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4382621e-125AM438262.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X063445.19, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573181.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-108IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLB9RRQ70.0B9RRQ7_RICCO; Nucleic acid binding protein, putative
STRINGXP_002516426.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66730.11e-108C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]