PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29780.m001355
Common NameLOC8283300, RCOM_0775080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Trihelix
Protein Properties Length: 312aa    MW: 35623.1 Da    PI: 9.7256
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29780.m001355genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.83.9e-2049140286
       trihelix   2 WtkqevlaLiearremeerlrr.......gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    Wt qe+l+Li+a++ ++er ++       +k  + +W++v ++++++g+ rs++qC++kw+nl +++kk+++ + + ++ +ss++p +  +e
  29780.m001355  49 WTIQETLTLITAKKLDDERRSKpstvastSKPGELRWKWVENYCWAHGCFRSQNQCNDKWDNLLRDFKKVRDYQARSNDSDSSSFPSYWTME 140
                    **************888887753333322568899*****************************************9999*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-539113IPR009057Homeodomain-like
PROSITE profilePS500907.20141112IPR017877Myb-like domain
PfamPF138372.6E-1448141No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSEPPPPLQQ PPPLPPPPLH LPLLPFSTIT TTTTTISSSS NREYRKGNWT IQETLTLITA  60
KKLDDERRSK PSTVASTSKP GELRWKWVEN YCWAHGCFRS QNQCNDKWDN LLRDFKKVRD  120
YQARSNDSDS SSFPSYWTME RHQRKFYNLP SNMSLEVFEA LNEVVQRRYN TNITTTPQQQ  180
HVSAVAPPPV PVTSVREAMP ETVVMDAPAV PERSESSATE SSDKHDGNTG PKRRKVRNIG  240
ASIKRSASIL AQTIRNCEEK KHKRHQELLE FEQRRLQLEE TRNEVNKQGM TDLVLAVTKL  300
STAIQSLISN QT
Cis-element ? help Back to Top
SourceLink
PlantRegMap29780.m001355
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002521872.10.0trihelix transcription factor ASR3
TrEMBLB9S7A30.0B9S7A3_RICCO; Transcription factor, putative
STRINGXP_002521872.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-44Trihelix family protein