PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29763.m000186
Common NameRCOM_0753960
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family AP2
Protein Properties Length: 385aa    MW: 41038.1 Da    PI: 7.2979
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29763.m000186genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.83.6e-1580131155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  29763.m000186  80 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 131
                    57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.2E-5351IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-91247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-91346IPR001471AP2/ERF domain
CDDcd000182.13E-121347No hitNo description
PROSITE profilePS5103210.7181345IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-1880141IPR016177DNA-binding domain
PfamPF008474.4E-1080131IPR001471AP2/ERF domain
CDDcd000185.87E-2680141No hitNo description
SMARTSM003801.5E-3381145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1881140IPR001471AP2/ERF domain
PROSITE profilePS5103219.04581139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055114Biological Processoxidation-reduction process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDCTNIIIVF PTVYLGGYDK EEKAARAYDL AALKYWGPTT TTNFPISNYE KELEEMKHMT  60
RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE  120
AYDIAAIKFR GLNAVTNFDM SRYDVKSIAN SNLPIGGISG KPKNSQDSAS DSKSIDGGCR  180
SDDRDLSSAS SPVVTFASHQ PTTTTSALNF VMPIKQDPSD YWSNILGCHN PTAAATTSST  240
TLNSAKNTNA TTTTLAQSIL FPSAAAFPST TAFGMDLINV SSSSVNESNN NNNNNNNNVL  300
LYNGGYNLHQ HGEGGGGGGG GGGISSGSTS TSSSIPFATP VALNSTGSNY DGNSSYGSWI  360
AQSLHSLQSA KPNLSMFQTP IFGME
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531028.20.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-111AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB9SYF90.0B9SYF9_RICCO; Transcription factor, putative
STRINGPOPTR_0006s18330.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.15e-99AINTEGUMENTA-like 5