PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29751.m001879
Common NameRCOM_0733130
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 246aa    MW: 27407.7 Da    PI: 7.1941
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29751.m001879genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.000195779123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   y+C+ C + Fs+   L  H++ H
  29751.m001879 57 YECTFCRRGFSNAQALGGHMNIH 79
                   99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.5E-55583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.19E-65584No hitNo description
PROSITE profilePS5015711.5525784IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MHPLARSKLT CLLLSLSLSL SSLLLRKGCL VMETDQSNQE NSDQDQERGG SCQVRSYECT  60
FCRRGFSNAQ ALGGHMNIHR KDKAKLKHST SNEPRQHLQS VDMISNNIIS HSFSPIPTAP  120
SSHPVMEVKS GQDRSSPMIN WAWILDKESD TCKKNKTHVG EIQQLCFFVD NPSSTKDQDH  180
HHQQEEQQPG NLHGSTEKGL SPSHGLSSSE LDLELRLGPE PHDSSPATGT KRFVPNYVLS  240
MEKAIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMap29751.m001879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013336.11e-150transcriptional regulator TAC1
TrEMBLB9S3E60.0B9S3E6_RICCO; Transcriptional regulator SUPERMAN, putative
STRINGXP_002520515.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-15C2H2 family protein