PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29630.m000789
Common NameRCOM_0524490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family FAR1
Protein Properties Length: 267aa    MW: 30102 Da    PI: 6.1048
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29630.m000789genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR11002.4e-3177173190
           FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                    +fYn+YAk++GFs+r+++ ++sk++++i++r+f+Cskeg+r+e++ k       ++k+rr r+ tr gCka ++v+++++gkw+v+k+e++HnHe+
  29630.m000789  77 NFYNSYAKQMGFSIRVNTYYRSKKDNSIISREFCCSKEGFRREKHAKtvesggdETKRRRARPITREGCKALMTVRRRDNGKWHVAKVENNHNHEM 172
                    6*******************************************9999*****999999************************************9 PP

           FAR1  90 a 90 
                    +
  29630.m000789 173 V 173
                    7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.4E-2877173IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDHAPSIEAK ELVDCYGGLE EEGDEYCVVE DVDAPIVLDD TNKDDDNVNV EFSQSLNGGI  60
MEPALGMEFA SEDDARNFYN SYAKQMGFSI RVNTYYRSKK DNSIISREFC CSKEGFRREK  120
HAKTVESGGD ETKRRRARPI TREGCKALMT VRRRDNGKWH VAKVENNHNH EMVTPAMRHF  180
LRLHKEEFDR KNSLSNSFSS CGGIGLDACA SVDSNHVGNT AFSSQNCVNY IGRGRLSTFG  240
VDAQSLLGFF KVMQASDRAF YYAIQXX
Cis-element ? help Back to Top
SourceLink
PlantRegMap29630.m000789
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025014362.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLB9SJB20.0B9SJB2_RICCO; Uncharacterized protein
STRINGXP_002526081.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1968044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-34FAR1-related sequence 5