PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29603.m000510
Common NameLOC8285190, RCOM_0491600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 138aa    MW: 15378.9 Da    PI: 8.8281
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29603.m000510genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.3e-201364256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa+a+++a+  ++g+
  29603.m000510 13 KYRGVRRRP-WGKFAAEIRDSTR---QgARVWLGTFNTAEEAARAYDRAAYTMRGH 64
                   8********.**********322...24**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.1E-341377IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-311373IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-231372IPR016177DNA-binding domain
CDDcd000185.84E-181372No hitNo description
PROSITE profilePS5103223.6571371IPR001471AP2/ERF domain
PfamPF008471.2E-151364IPR001471AP2/ERF domain
PRINTSPR003679.2E-121425IPR001471AP2/ERF domain
PRINTSPR003679.2E-123753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDEDKLKVGG EVKYRGVRRR PWGKFAAEIR DSTRQGARVW LGTFNTAEEA ARAYDRAAYT  60
MRGHLAILNF PNEYPLASGS SGGNAGASSS SSAPHYTSAS SSSSSSSAMQ RQVFEFEYLD  120
DRLLEEMLEQ EEQRNKKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-3911381129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29603.m000510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002529292.15e-98ethylene-responsive transcription factor ERF096
SwissprotQ9LTC51e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9STH31e-96B9STH3_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002529292.12e-97(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.14e-24ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]