PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29589.m001266
Common NameLOC8275248, RCOM_0475150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 345aa    MW: 37451.3 Da    PI: 6.9734
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29589.m001266genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00058137159123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    y+C+ C++sF++   L  H  +H
  29589.m001266 137 YECKTCNRSFPSFQALGGHRASH 159
                    99**********99999998887 PP

2zf-C2H2130.00031240262123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++Cg  F++   L  H+r+H
  29589.m001266 240 HECSICGSEFTSGQALGGHMRRH 262
                    78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.86E-6136165No hitNo description
PfamPF139122.5E-13136161IPR007087Zinc finger, C2H2
SMARTSM003550.06137159IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926137164IPR007087Zinc finger, C2H2
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-5237265No hitNo description
SMARTSM003550.019240262IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-11240264IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.097240267IPR007087Zinc finger, C2H2
PROSITE patternPS000280242262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELAQEEFMG SNDLTQIMKG KRTKRQRSSS PHKAAGGGGV SSSSSSGCGD GGGREKGVVI  60
EEYYGSISSY TSCSEVYEST EEEEDMANCL ILLAQGDGPR IIDESNNNGT RMEKFSSRKF  120
SQVSTATNTN KAGFYVYECK TCNRSFPSFQ ALGGHRASHK KPKPEEKKAP LAVAAAATTS  180
MVNDVDHNLE DDCQMNKSST SSPDHQYHHH HHPLSLQIST INSSSSKGNF LGSNNKAKIH  240
ECSICGSEFT SGQALGGHMR RHRANTNNQV ALTTSTIDQT SVTTTNSING CSDDRIIKPR  300
TILSLDLNLP APEDDHHHRE PKFQFAATQQ ALVFSAAPAL VDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMap29589.m001266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523729.10.0zinc finger protein ZAT5
TrEMBLB9SCL00.0B9SCL0_RICCO; Uncharacterized protein
STRINGXP_002523729.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.13e-49C2H2 family protein