PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29584.m000237
Common NameLOC8277473, RCOM_0463510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ERF
Protein Properties Length: 113aa    MW: 13046.6 Da    PI: 5.0106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29584.m000237genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.13e-201060255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +g+++AeIrd +++g  +r++lg+f taeeAa+a+++a+  ++g
  29584.m000237 10 KYRGVRRRP-WGKFAAEIRDSTKQG--ARIWLGTFNTAEEAARAYDKAAYIMRG 60
                   8********.**********55444..***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-291068No hitNo description
PROSITE profilePS5103223.4851068IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-321070IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-241070IPR016177DNA-binding domain
SMARTSM003802.5E-361074IPR001471AP2/ERF domain
PfamPF008473.3E-141060IPR001471AP2/ERF domain
PRINTSPR003677.7E-121122IPR001471AP2/ERF domain
PRINTSPR003677.7E-123450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MESGKSQEEK YRGVRRRPWG KFAAEIRDST KQGARIWLGT FNTAEEAARA YDKAAYIMRG  60
QLAVLNFPQE YPPTNKNVAR TGIDKSKEVI EFECLDDKLL EELLDFEENQ NNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3469910114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap29584.m000237
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532365.11e-79ethylene-responsive transcription factor ERF095
SwissprotQ9LTC51e-38ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLB9T2963e-78B9T296_RICCO; Ethylene-responsive transcription factor, putative
STRINGXP_002532365.15e-79(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23220.15e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]