PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29216.m000249
Common NameRCOM_0404510
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 469aa    MW: 52255.4 Da    PI: 6.5852
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29216.m000249genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.41e-10225260540
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                    k  rr+++NReAAr+sR+RKka++++Le     L++
  29216.m000249 225 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLTQ 260
                    7789***********************985555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-8218267No hitNo description
SMARTSM003382.1E-8221284IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.266223267IPR004827Basic-leucine zipper domain
CDDcd147086.33E-21225271No hitNo description
SuperFamilySSF579597.74E-7225267No hitNo description
PfamPF001706.5E-8225263IPR004827Basic-leucine zipper domain
PROSITE patternPS000360228243IPR004827Basic-leucine zipper domain
PfamPF141441.4E-32317391IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MGFSWAFQGV VVGETENQAE ERKLVDSSFM ASNKVINNHS TQLEHQQQQQ QQNHHHHHHH  60
QQQHHHQLQE HHHPHQQQQQ IPYGMLQSSS SSSIPGSFIS KDAGAYDLGE LDQALFLYLD  120
GQDPSAVQDQ RQSNTGMRPP TLNIFPSQPM HVVEPSSAKT NTPGLVSSAT SGSKRPSEPS  180
MELANARNDV ASAPEPAKTL KREGNRKGPT TSSSEQEGPK TPDPKTLRRL AQNREAARKS  240
RLRKKAYVQQ LESSRIRLTQ LEQELQRARA QGLFFGGGGN LLAGDQGLPV GINNISSDAA  300
VFDMEYARWV EEHHRLTCEL RAAVQEHLPE NELRLFVDNC LAHYDEVMNL KSMVAKSDVF  360
HLVSGMWKTP AERCFMWMGG FRPSELIKVI LNQIEPLTEQ QILGICGLQQ STQEAEEALS  420
QGLEALNQSL SDTIASDSLS CPPNMANYMG QMAVAMNKLS TLEGFVRQV
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap29216.m000249
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002532393.20.0bZIP transcription factor TGA10
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLB9T2C40.0B9T2C4_RICCO; Transcription factor HBP-1b(C1), putative
STRINGXP_002532393.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47313455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-159bZIP family protein