PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28694.m000662
Common NameLOC8280380, RCOM_0311620
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 552aa    MW: 59963.9 Da    PI: 8.918
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28694.m000662genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0587109123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  28694.m000662  87 FVCEICNKGFQRDQNLQLHRRGH 109
                    89*******************88 PP

2zf-C2H212.60.00042164186123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H +t+
  28694.m000662 164 WKCDKCSKRYAVQSDWKAHSKTC 186
                    58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-586109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-786109No hitNo description
PROSITE profilePS5015710.94987109IPR007087Zinc finger, C2H2
SMARTSM003550.01787109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028089109IPR007087Zinc finger, C2H2
SMARTSM0035599129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-5152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.71E-7159184No hitNo description
SMARTSM00355140164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MMKGLIFHQQ QQQEENMSNL TSASGEASVS SGNRNETNYP PQQYFAHPPP PQSQPPAKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTN  120
KEVIRKKVYV CPETSCVHHD PSRALGDLTG IKKHFSRKHG EKKWKCDKCS KRYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITDAPNPL LIPSNQSAAA  240
ASSATQNPIS LHQVPQLMNS HQNLHAFSLK KEQQTFSTTT ALRPELPPWL ACPPGVLGSG  300
SGHGPGPPHH QQTPIEHHHL SSSILNFQQD LGSSNPNPSL GPTLPHYQAA PPPSPHMSAT  360
ALLQKAAQMG ATMSSKTTTA GLMMRPHQHQ HQHEQAHVTA DSTNNNANTT GFVLNLSSRD  420
QELAASGGGG SFVHSLQAAG ANGVLLQEMM NSLSSAASGF EGTATATATS FEDAFVSGVL  480
NNSKKDGNFL DGSLSKATTN GNNGGEDLTR DFLGLRAFSH SDILNMAAGL GNCVNTSHEQ  540
QQQNQSQKTW RG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34160221364Zinc finger protein JACKDAW
5b3h_F2e-34160221364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113126KLKQRTNKEVIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28694.m000662
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527396.10.0protein indeterminate-domain 7
RefseqXP_015579824.10.0protein indeterminate-domain 7
SwissprotQ9LRW71e-135IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLB9SN270.0B9SN27_RICCO; Nucleic acid binding protein, putative
STRINGXP_002527396.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-133indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]