PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28617.m000206
Common NameRCOM_0290450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 126aa    MW: 15120.3 Da    PI: 9.6426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28617.m000206genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.31e-1110108196
                    EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-.SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkld.grse 89 
                    f k+l++s+ +  ++l +p + ++++   +++   s+  t +d++g+ + +++++r+++     y+ ++ W  Fv+a+ L++gD+v F+ + ++se
  28617.m000206  10 FRKILKQSHIT--HQLNIPEQVLQRYpiyNLE--YSRNFTCYDKDGNLFPFRISIRRSPVYfkpYFARAVWGPFVEAKSLRVGDVVEFYTMiDNSE 101
                    66777444443..569**********966444..67789999***********999999888889999*********************6535577 PP

                    E..EEEE CS
             B3  90 felvvkv 96 
                    +   v++
  28617.m000206 102 AGIQVRA 108
                    6666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-144115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-108102IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-149107No hitNo description
PfamPF023622.8E-910110IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MGDRNMQLIF RKILKQSHIT HQLNIPEQVL QRYPIYNLEY SRNFTCYDKD GNLFPFRISI  60
RRSPVYFKPY FARAVWGPFV EAKSLRVGDV VEFYTMIDNS EAGIQVRAWR QEPGTNNWRH  120
VEEFMP
Cis-element ? help Back to Top
SourceLink
PlantRegMap28617.m000206
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB9T4543e-90B9T454_RICCO; Uncharacterized protein
STRINGXP_002533023.15e-91(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15290312