PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28196.m000211
Common NameLOC8286277, RCOM_0193990
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 354aa    MW: 39308.6 Da    PI: 5.2712
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28196.m000211genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.51.9e-1089119434
                    XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                    +k++rr+++NReAAr+sR+ Kka++++Le  
  28196.m000211  89 DKVQRRLAQNREAARKSRLQKKAYVQQLESS 119
                    79**************************974 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-784132No hitNo description
SMARTSM003383.5E-686157IPR004827Basic-leucine zipper domain
PfamPF001701.9E-789118IPR004827Basic-leucine zipper domain
CDDcd147086.85E-2290142No hitNo description
SuperFamilySSF579591.29E-590131No hitNo description
PfamPF141449.9E-30177251IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MNSPSTQFVS SGRTGIYEPI HQIGMWGEPF KSNGIPNAST SMFVAGDPNS SQSIIIAVDT  60
KLDNQSEDTS QNTLGPSSKY DQEATKPIDK VQRRLAQNRE AARKSRLQKK AYVQQLESSR  120
LKLIQIEQEL ERARQQGLNI GGGVETSHLG FAGPNNSGIA TFEMEYGHWL EEQNRQIGDL  180
RTALNAHISD IELCILVESG INHYSELFRM KATAAKADVF YLMSGMWKSS AERFFLWIGG  240
FRPSELLKIL KPQLEPLTDQ QLLDVCNLKQ SCQQAEDALS QGMEKLQQTL VEAVAAGRLG  300
EASHLPQMDT AMEKLEGLVR FVQQKDLVSS LLECIFLPLS ISADINFLCP SLSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap28196.m000211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025015369.10.0transcription factor TGA1 isoform X1
SwissprotQ392371e-156TGA1_ARATH; Transcription factor TGA1
TrEMBLB9T1D20.0B9T1D2_RICCO; Transcription factor TGA1, putative
STRINGXP_002532051.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-158bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]