PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 28152.m000908
Common NameLOC8272263, RCOM_0175070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family C2H2
Protein Properties Length: 252aa    MW: 26775.4 Da    PI: 8.7254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
28152.m000908genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002888110123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ykC+ C+k F++   L  H  +H
  28152.m000908  88 YKCTVCNKAFPSYQALGGHKASH 110
                    9***********99999998887 PP

2zf-C2H2140.00014142164123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k+F++   L  H r+H
  28152.m000908 142 HECSICHKTFPTGQALGGHKRRH 164
                    78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.9E-1388112IPR007087Zinc finger, C2H2
SMARTSM003550.006288110IPR015880Zinc finger, C2H2-like
SuperFamilySSF576675.82E-1088110No hitNo description
PROSITE profilePS5015710.28488115IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576675.82E-10137164No hitNo description
PfamPF139123.2E-13141166IPR007087Zinc finger, C2H2
PROSITE profilePS501579.39142164IPR007087Zinc finger, C2H2
SMARTSM003550.035142164IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280144164IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MALEALNSPT TATPFNYEDT WTKRKRSKRP RSESPAPTEE EYLALCLIML ARGGNSTSTS  60
TSTSTSTSAK SASPSPPPPQ PPALNLSYKC TVCNKAFPSY QALGGHKASH KKSSSETATI  120
DNPSTSTTTA SAVPTATSGR THECSICHKT FPTGQALGGH KRRHYEGPGG GNNNTNSTIT  180
SSEGGASATQ SQSQSQSRGG FEIDLNLPAL PEFWSANNNG RDQEVESPLP GKKPRLSFLK  240
QEDIDTKISL QD
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in abiotic stress responses. Can repress the stress responsive genes DREB1A and LTI78. Probably involved in jasmonate (JA) early signaling response. May regulate the expression of the JA biosynthesis gene LOX3 and control the expression of TIFY10A/JAZ1, a key repressor in the JA signaling cascade. {ECO:0000269|PubMed:12032082, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:18216250, ECO:0000269|PubMed:20140232, ECO:0000269|PubMed:8662738}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap28152.m000908
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, cold and drought stresses. Down-regulated by gibberellin. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:11351099, ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:17112521, ECO:0000269|PubMed:8662738}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579880.10.0zinc finger protein ZAT10
SwissprotQ962894e-58ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLB9SND30.0B9SND3_RICCO; Zinc finger protein, putative
STRINGXP_002527502.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13273291
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19580.28e-34zinc-finger protein 2
Publications ? help Back to Top
  1. Li C,Chang PP,Ghebremariam KM,Qin L,Liang Y
    Overexpression of tomato SpMPK3 gene in Arabidopsis enhances the osmotic tolerance.
    Biochem. Biophys. Res. Commun., 2014. 443(2): p. 357-62
    [PMID:24275141]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Munekage YN,Inoue S,Yoneda Y,Yokota A
    Distinct palisade tissue development processes promoted by leaf autonomous signalling and long-distance signalling in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(6): p. 1116-26
    [PMID:25293694]
  5. van Buer J,Cvetkovic J,Baier M
    Cold regulation of plastid ascorbate peroxidases serves as a priming hub controlling ROS signaling in Arabidopsis thaliana.
    BMC Plant Biol., 2016. 16(1): p. 163
    [PMID:27439459]
  6. Corrales AR, et al.
    Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.
    Plant Cell Environ., 2017. 40(5): p. 748-764
    [PMID:28044345]
  7. Nguyen HM, et al.
    Ethanol Enhances High-Salinity Stress Tolerance by Detoxifying Reactive Oxygen Species in Arabidopsis thaliana and Rice.
    Front Plant Sci, 2017. 8: p. 1001
    [PMID:28717360]
  8. Geilen K,Heilmann M,Hillmer S,Böhmer M
    WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions.
    Sci Rep, 2017. 7(1): p. 14235
    [PMID:29079824]
  9. Liu X, et al.
    Histone Deacetylase AtSRT1 Links Metabolic Flux and Stress Response in Arabidopsis.
    Mol Plant, 2017. 10(12): p. 1510-1522
    [PMID:29107034]
  10. Huang K, et al.
    Arabidopsis calcium-dependent protein kinase AtCPK1 plays a positive role in salt/drought-stress response.
    Biochem. Biophys. Res. Commun., 2018. 498(1): p. 92-98
    [PMID:29196259]