PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 27524.m000293
Common NameRCOM_0030050
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family LBD
Protein Properties Length: 214aa    MW: 23832.5 Da    PI: 9.9794
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
27524.m000293genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26094.21.5e-294106198
         DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                    +C++C+vlr++C +dC+++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +PvyG+vg+++++++  +q++
  27524.m000293   4 SCNGCRVLRKGCGDDCAIRPCLqwirsPDAQANATLFLAKFYGRAGLINLIEAGPQHLRPAVFRSLLYEACGRIVNPVYGSVGLLWSGNWAHCQSA 99 
                    6**********************************************************************************************9 PP

         DUF260  92 aelallk 98 
                    ++ +l++
  27524.m000293 100 VDSVLRG 106
                    9988766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6233109IPR004883Lateral organ boundaries, LOB
PfamPF031958.5E-244100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCGDDCA IRPCLQWIRS PDAQANATLF LAKFYGRAGL INLIEAGPQH  60
LRPAVFRSLL YEACGRIVNP VYGSVGLLWS GNWAHCQSAV DSVLRGTPIV QMPSSGSDTP  120
QLPPQLIDPL KTYDIRHVSK EAELNKVKSR SRFKRPVNRT PSSPTDQPTG SVRIGDLSFE  180
PLREQLMSQM KSRELVTSSI IASRFLNAYL EFLR
Cis-element ? help Back to Top
SourceLink
PlantRegMap27524.m000293
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582369.11e-140LOB domain-containing protein 42
SwissprotQ9CA309e-74LBD42_ARATH; LOB domain-containing protein 42
TrEMBLB9T0581e-157B9T058_RICCO; LOB domain-containing protein, putative
STRINGXP_002531627.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.14e-76LOB domain-containing protein 42