PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G116500.1
Common NamePHAVU_011G116500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 196aa    MW: 22707.7 Da    PI: 8.5495
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G116500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260118.63.7e-37111101100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCaaCk++r+kC+++C+lapyfp++++++f +vhk+FG+sn++kl+k+++e++r+++++sl++eA++r+rdPv+G +g ++k+ ++++++ 
  Phvul.011G116500.1  11 ACAACKHQRKKCSENCILAPYFPSNRSREFHAVHKVFGVSNITKLVKNAREDDRRRVVDSLTWEACCRQRDPVHGPYGEYTKVYNEYKKVL 101
                         7*****************************************************************************************9 PP

              DUF260  92 aelallkee 100
                          el++ +++
  Phvul.011G116500.1 102 DELKRFRSQ 110
                         999987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.17910111IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-3511107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MQRNNSGMHP ACAACKHQRK KCSENCILAP YFPSNRSREF HAVHKVFGVS NITKLVKNAR  60
EDDRRRVVDS LTWEACCRQR DPVHGPYGEY TKVYNEYKKV LDELKRFRSQ HQMLQFPSLG  120
LKSVQDLIAC KGEDNAEVDN TLDYLHGKKN GIIDSETYNT YCSNYFQEFQ NLRPPEVVIP  180
FQQHSQSYYI TGIHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2041044104LOB family transfactor Ramosa2.1
5ly0_B3e-2041044104LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G116500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-158AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132691.11e-148hypothetical protein PHAVU_011G116500g
SwissprotQ9LNB99e-38LBD2_ARATH; LOB domain-containing protein 2
TrEMBLV7AHH71e-146V7AHH7_PHAVU; Uncharacterized protein
STRINGXP_007132691.11e-147(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.14e-40LOB domain-containing protein 2