PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.011G050600.1
Common NamePHAVU_011G050600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 431aa    MW: 48952.9 Da    PI: 8.8356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.011G050600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.78e-17695197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93
                        f k l+ps   + ++l+lp +f++++g +   s  +tl  ++g +W+v l  +k +++y++ +GW+eF +   + +g  +vF+++g+s+f  +
  Phvul.011G050600.1  6 FHKLLLPSTL-QPNQLRLPDDFMRKYGRE--LSPIVTLSVPDGSVWRVGL--KKADNKYWFLDGWQEFIQHYSIGVGYLLVFRYEGKSSF--N 91
                        5566655555.5566***********854..7779***************..*********************************99999..7 PP

                        EEEE CS
                  B3 94 vkvf 97
                        v+vf
  Phvul.011G050600.1 92 VHVF 95
                        7777 PP

2B356.45.4e-18299389498
                         E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         vl ps+  + ++++lp  fae+h +g++     ++l+ ++gr+W v++ yr+++    l++GW eF  +n+L egD++vF+l + +e  l 
  Phvul.011G050600.1 299 VLRPSYLYRGCIMYLPSCFAEKHlNGVSG---FIKLQISNGRQWPVRCLYRGGR--AKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQ 384
                         78899******************877743...59**************665555..66***********************9988888899 PP

                         EEEE- CS
                  B3  94 vkvfr 98 
                         v++fr
  Phvul.011G050600.1 385 VSIFR 389
                         99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.04E-24296IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-24296IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-18496No hitNo description
PROSITE profilePS5086313.296598IPR003340B3 DNA binding domain
PfamPF023625.7E-14695IPR003340B3 DNA binding domain
SMARTSM010192.3E-17698IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-24288389IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-24289390IPR015300DNA-binding pseudobarrel domain
CDDcd100173.29E-22294389No hitNo description
PROSITE profilePS5086313.803296391IPR003340B3 DNA binding domain
SMARTSM010193.6E-16296391IPR003340B3 DNA binding domain
PfamPF023625.6E-16299389IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MTHPSFHKLL LPSTLQPNQL RLPDDFMRKY GRELSPIVTL SVPDGSVWRV GLKKADNKYW  60
FLDGWQEFIQ HYSIGVGYLL VFRYEGKSSF NVHVFNLATS EINYQSAMRC SNEGPHFANL  120
LKFFEEMDDE DSIEILDSSP SHLAPSSLQN KVLAGSVDKM SPAKCYTPPA LQNLFNGSKL  180
NSINWGEGGD AHCSKSVNSL DNLLTRDIGV QFNAVEFKKS TEELKLRASM EERMKKTARK  240
KRKSEGQEAS AEQEEEVEMR FRFYESASAR KRTVTAEERE RAINAAKAFE PPNPFCRVVL  300
RPSYLYRGCI MYLPSCFAEK HLNGVSGFIK LQISNGRQWP VRCLYRGGRA KLSQGWFEFS  360
LENNLGEGDV CVFELLRMKE VVLQVSIFRI TEDVGLLSPP PLQQNQKMSS AKLLNTPLQQ  420
HLTSTKIIRN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-7226239415146B3 domain-containing transcription factor VRN1
4i1k_B9e-7226239415146B3 domain-containing transcription factor VRN1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of vernalization. Acts as transcriptional repressor of FLC, a major target of the vernalization pathway. Binds DNA in vitro in a non-sequence-specific manner. {ECO:0000269|PubMed:12114624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.011G050600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007131905.10.0hypothetical protein PHAVU_011G050600g
SwissprotQ8L3W11e-131VRN1_ARATH; B3 domain-containing transcription factor VRN1
TrEMBLV7AEE90.0V7AEE9_PHAVU; Uncharacterized protein
STRINGXP_007131905.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-120B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Kumar A,Singh A,Panigrahy M,Sahoo PK,Panigrahi KCS
    Carbon nanoparticles influence photomorphogenesis and flowering time in Arabidopsis thaliana.
    Plant Cell Rep., 2018. 37(6): p. 901-912
    [PMID:29541883]