PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G124700.1
Common NamePHAVU_010G124700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 385aa    MW: 42688.3 Da    PI: 4.6131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G124700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18116165255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Phvul.010G124700.1 116 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDTEARRIRG 165
                         69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.078116173IPR001471AP2/ERF domain
SMARTSM003801.6E-37116179IPR001471AP2/ERF domain
CDDcd000183.62E-32116174No hitNo description
SuperFamilySSF541717.19E-22116174IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-32116174IPR001471AP2/ERF domain
PfamPF008479.0E-11117164IPR001471AP2/ERF domain
PRINTSPR003671.3E-11117128IPR001471AP2/ERF domain
PRINTSPR003671.3E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MCGGAIISDF IPAGPAGRSR RVTADILWPN LRKRFSKPLL DDDFEAGFRE FKDDSEIEDD  60
DDEDEEDLMV IGVKKPFGFT RPNKTSKSLS RASSTVNSVE SKGQAEESAK RKRKNQYRGI  120
RQRPWGKWAA EIRDPRKGVR VWLGTFSTAE EAARAYDTEA RRIRGKKAKV NFPDEPSAAS  180
SKRLKVNPEA QPLKGKLNSV KPKMNQMFNF GDYLEDYYSS VDQVEQKPLV NQYVNPGPFT  240
GNGVQLSPVT PSADVIAYFS SEHSSNSFDY SDLGWGEQVS KTPEISSMLS APLEGESQFV  300
QGADQIQRND TQDMLSVQDD SAKTLSEELA DIESQLKFFE TPLFDGSWTE ASLASLLGTD  360
ATQDAGNPLN LWSFDDLPSM AGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-21116173260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-211151811380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G124700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN4166020.0JN416602.1 Glycine max cultivar Jilin 32 ethylene-responsive transcription factor 7 (ERF7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007135380.10.0hypothetical protein PHAVU_010G124700g
TrEMBLV7AP710.0V7AP71_PHAVU; Uncharacterized protein
STRINGXP_007135380.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-58related to AP2 12