PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G092300.1
Common NamePHAVU_010G092300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 323aa    MW: 34668.4 Da    PI: 8.0929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G092300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.6e-203686256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+eeAa+a+++a+++l+ge
  Phvul.010G092300.1 36 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEEAARAYDEAARALRGE 86
                        578******.7*********42...35**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.2E-283693IPR001471AP2/ERF domain
PfamPF008476.0E-153686IPR001471AP2/ERF domain
PROSITE profilePS5103220.3633693IPR001471AP2/ERF domain
SMARTSM003801.6E-333699IPR001471AP2/ERF domain
CDDcd000187.79E-303693No hitNo description
PRINTSPR003673.3E-73748IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-203793IPR016177DNA-binding domain
PRINTSPR003673.3E-75975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAGAEATKYA SPTSPTTTAT TNMATRSNKP ATMIRRFIGV RQRPSGRWVA EIKDSSQHVR  60
LWLGTYDTPE EAARAYDEAA RALRGENART NFAPMNQVTG QSGSNLLTGD GKPGLSFASL  120
KAKLSKNLQN IMARASDHNK SSKSRVSDHF TFASIFHRRS YQIPEGDMRN IEKVVQPSII  180
VPPVEGGVDY AAAANWESAS SVSDCSSEWA GFGKLGLDQS DGSDIGEFGV GDQGFLEQLM  240
GWVESPDVSD QSECSRSKRF KVSSSVLVPP TFTASPYDCG SPYSGYASPY SGYASPYNGY  300
ASPYNGCASP CNGCASPYYN KK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1436921471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G092300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134987.10.0hypothetical protein PHAVU_010G092300g
TrEMBLV7ARZ60.0V7ARZ6_PHAVU; Uncharacterized protein
STRINGXP_007134987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-15related to AP2 11