PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G054000.1
Common NamePHAVU_010G054000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 284aa    MW: 31175.8 Da    PI: 4.8438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G054000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18111161256
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Phvul.010G054000.1 111 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 161
                         69****998.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-22111169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.6E-32111169IPR001471AP2/ERF domain
PfamPF008475.2E-13111161IPR001471AP2/ERF domain
SMARTSM003808.9E-37111174IPR001471AP2/ERF domain
PROSITE profilePS5103223.261111168IPR001471AP2/ERF domain
PRINTSPR003672.4E-10112123IPR001471AP2/ERF domain
CDDcd000188.91E-33112170No hitNo description
PRINTSPR003672.4E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MRKRISMESD ADFFNSSATS SSTSTSTSTT TTTTTPSIFI DTNTSSTSSS SSSSLTPSTS  60
STSNSDSCIK EHSKTPQDDS TTPLTSLENE KDSKGCKKRQ RENPSNQNYP TYRGVRMRNW  120
GKWVSEIREP RKKSRIWLGT YPTAEMAARA HDVAALAIKG HSAYLNFPEL AQELPRPATT  180
SPKDIQAAAA KAANTSFELV KHCQIEDEEE GEEPNQAEHA SSSTLSMDNT QESSSSHSTN  240
DDDTLFDLPD LFPDQLCSYS SSWHLCAVGS GFRLEESLFW ENY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-161121681572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G054000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134514.10.0hypothetical protein PHAVU_010G054000g
SwissprotQ8LBQ74e-63ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLV7APH50.0V7APH5_PHAVU; Uncharacterized protein
STRINGXP_007134514.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.15e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]