PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G050800.1
Common NamePHAVU_010G050800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 165aa    MW: 17655.4 Da    PI: 8.9472
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G050800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-1894143355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +kGVr+++ +g+++AeIrdp+ ng  +r++lg++ +ae Aa a+++a+ +++g
  Phvul.010G050800.1  94 FKGVRRRP-WGKFAAEIRDPKRNG--ARVWLGTYESAESAALAYDRAAFEMRG 143
                         8*******.**********98776..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.95E-2992153No hitNo description
SMARTSM003802.7E-3693157IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-3193152IPR001471AP2/ERF domain
PROSITE profilePS5103223.4293151IPR001471AP2/ERF domain
PfamPF008476.3E-1494143IPR001471AP2/ERF domain
SuperFamilySSF541713.14E-2294152IPR016177DNA-binding domain
PRINTSPR003671.6E-1294105IPR001471AP2/ERF domain
PRINTSPR003671.6E-12133153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNFNTTLHSH DHALLQSIQH FLLDDTQDLN ALAAVLASPD GVSPRQSDGG STSTLFTSAV  60
NSPSASLGQS TTTSTAARGE YTVARGGNAP YQNFKGVRRR PWGKFAAEIR DPKRNGARVW  120
LGTYESAESA ALAYDRAAFE MRGSKAKLNF PHLIGSHEPS HEPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3092158470ATERF1
3gcc_A1e-3092158470ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G050800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-79AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134480.11e-119hypothetical protein PHAVU_010G050800g
TrEMBLV7ALT41e-117V7ALT4_PHAVU; Uncharacterized protein
STRINGXP_007134480.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-39ethylene-responsive element binding factor 13