PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G050600.1
Common NamePHAVU_010G050600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 193aa    MW: 21430.2 Da    PI: 9.6692
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G050600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1766115255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+++AeI+dp+ n    r++lg++ t+eeA  a+++a+ k++g
  Phvul.010G050600.1  66 HFRGVRRRS-WGKFAAEIWDPKRN---GRVWLGTYETEEEAGLAYDRAAFKMRG 115
                         79****887.**********9654...7************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-2865125No hitNo description
SMARTSM003801.2E-3466129IPR001471AP2/ERF domain
SuperFamilySSF541716.21E-2166124IPR016177DNA-binding domain
PROSITE profilePS5103222.53766123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-2966124IPR001471AP2/ERF domain
PfamPF008475.7E-1266115IPR001471AP2/ERF domain
PRINTSPR003671.1E-126778IPR001471AP2/ERF domain
PRINTSPR003671.1E-12105125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MANDLCSGVE SYELENVSDQ ETFYSSSYEN PIANPSHAHD ATQLFACMVE APVAAREVHA  60
PPKWKHFRGV RRRSWGKFAA EIWDPKRNGR VWLGTYETEE EAGLAYDRAA FKMRGSKAKL  120
NFPHLIGSNA RPERVIAAAV APKPNPPEAC LPPLSTAEDG SESQGSKKRR NLADLLNRLA  180
KNKSQRIITR KL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2663129269ATERF1
3gcc_A3e-2663129269ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G050600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-177AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134478.11e-142hypothetical protein PHAVU_010G050600g
SwissprotQ404793e-31ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLV7ALJ91e-140V7ALJ9_PHAVU; Uncharacterized protein
STRINGXP_007134478.11e-141(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-33ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]