PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G050500.1
Common NamePHAVU_010G050500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 218aa    MW: 23746.4 Da    PI: 6.2892
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G050500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-18107156355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+++AeIrd  + ng   r++lg++ +ae+Aa a+++a+ k++g
  Phvul.010G050500.1 107 YRGVRRRP-WGKYAAEIRDaKR-NG--GRVWLGTYESAEDAALAYDRAAFKMHG 156
                         9*******.**********443.43..9*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.787106164IPR001471AP2/ERF domain
SMARTSM003809.1E-36106170IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-22107165IPR016177DNA-binding domain
PRINTSPR003677.3E-13107118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-30107165IPR001471AP2/ERF domain
PfamPF008471.6E-12107156IPR001471AP2/ERF domain
CDDcd000181.65E-27107166No hitNo description
PRINTSPR003677.3E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNPHASNTNE NVLDLSELPA TTLFSRSSSF RSIFFAENWA ELPLKENDAD DMVIFGALRE  60
AAATTGWFPA NGNGVSNAAV KIENEGQSSD TNAASGIQPP PVKGLSYRGV RRRPWGKYAA  120
EIRDAKRNGG RVWLGTYESA EDAALAYDRA AFKMHGSKAK LNFPHLIGSD DAELIRVTSK  180
KRSLEVLSSN LSSSLVTAKR SKDNSFVDSE MNDLDMW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-29103171270ATERF1
3gcc_A4e-29103171270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G050500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-169AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134477.11e-158hypothetical protein PHAVU_010G050500g
SwissprotQ8L9K11e-53ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLV7AQI41e-157V7AQI4_PHAVU; Uncharacterized protein
STRINGXP_007134477.11e-158(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22393382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-42ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]