PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.010G035200.1
Common NamePHAVU_010G035200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 285aa    MW: 33293.4 Da    PI: 5.0323
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.010G035200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.72e-20126175255
                 AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +grW+AeIrd +     r kr++lg+f+taeeAa  +++a+ +++g
  Phvul.010G035200.1 126 KFRGVRQRP-WGRWAAEIRDpF-----RrKRVWLGTFDTAEEAAMVYDRAAISFRG 175
                         89*******.**********66.....45***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.1E-35126190IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-21126182IPR016177DNA-binding domain
PfamPF008471.0E-13126175IPR001471AP2/ERF domain
PROSITE profilePS5103223.209126183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-28126182IPR001471AP2/ERF domain
CDDcd000189.70E-34126181No hitNo description
PRINTSPR003671.1E-10127138IPR001471AP2/ERF domain
PRINTSPR003671.1E-10149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MNIFDILFQN IILKVEYYFV FLVAMEHEQK TITTKFVKSK FFFPKVIRIS ATDQNATDSS  60
SEEEDEEGRF LQLRRVKKVV NEIRIVHADE TKEHDNNSCY CCSTKYNESM EQQHHHQQRQ  120
NIKGHKFRGV RQRPWGRWAA EIRDPFRRKR VWLGTFDTAE EAAMVYDRAA ISFRGADAVT  180
NLIKPPLKDS ESVVKRTSCY GCASPTSVLL FQPWMEPLSS EETFKEEVFD GLKDEVDSFL  240
FSDHALYYDQ PLPTMFSDVD VSLDEDLESC KWDVDSYFTD DPFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21123188265ATERF1
3gcc_A1e-21123188265ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.010G035200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-151AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007134294.10.0hypothetical protein PHAVU_010G035200g
TrEMBLV7ANX50.0V7ANX5_PHAVU; Uncharacterized protein
STRINGXP_007134294.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-35cytokinin response factor 4