PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G251600.1
Common NamePHAVU_009G251600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 242aa    MW: 26209.6 Da    PI: 8.7585
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G251600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.1e-2092141255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a++ a+k+++g
  Phvul.009G251600.1  92 VYRGIRQRP-WGKWAAEIRDPH----KgVRVWLGTFSTAEEAARAYDTAAKRIRG 141
                         69*******.**********72....35************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.1E-3792155IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2392150IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-3292150IPR001471AP2/ERF domain
PROSITE profilePS5103224.2592149IPR001471AP2/ERF domain
PfamPF008472.6E-1392141IPR001471AP2/ERF domain
PRINTSPR003676.1E-1293104IPR001471AP2/ERF domain
CDDcd000181.07E-3393151No hitNo description
PRINTSPR003676.1E-12115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MCGGAIISDF IGVKRGRNLP KQQLWSELDP YSDLLGFDYS SATNAATAAA TSKLPLPVIP  60
DKKVESCEKK KKSVGAAAAA AGKKSERARK NVYRGIRQRP WGKWAAEIRD PHKGVRVWLG  120
TFSTAEEAAR AYDTAAKRIR GDKAKLNFPA ATPPPSKKRC LSPDLPQQSS SASTAPPPSS  180
ASYGGDSSGG EELDLKQLEL FLGLENEQLL PNNGVEWDNG YMMDDLWMLD DVVVTNHDLV  240
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2288149163ATERF1
3gcc_A1e-2288149163ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G251600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138947.11e-178hypothetical protein PHAVU_009G251600g
TrEMBLV7B3A91e-177V7B3A9_PHAVU; Uncharacterized protein
STRINGXP_007138947.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-29ethylene-responsive element binding protein