PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G225000.1
Common NamePHAVU_009G225000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 209aa    MW: 23074.4 Da    PI: 4.3155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G225000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.8e-181867255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+GVr +k +g++v+eIr p++   r+r++lg++++ae+Aa+a +aa+ +l+g
  Phvul.009G225000.1 18 SYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAEKAARAFDAAMFCLRG 67
                        6*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-291876IPR001471AP2/ERF domain
PROSITE profilePS5103221.0351875IPR001471AP2/ERF domain
SMARTSM003802.1E-311881IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-191876IPR016177DNA-binding domain
PfamPF008477.5E-111867IPR001471AP2/ERF domain
CDDcd000181.25E-281975No hitNo description
PRINTSPR003672.3E-91930IPR001471AP2/ERF domain
PRINTSPR003672.3E-94157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVKPGGVEKS AEERSSTSYR GVRKRKWGKY VSEIRLPNSR QRIWLGSYDS AEKAARAFDA  60
AMFCLRGSGA KFNFPSDPPN IAGGRTMTPS QIQIAAARFA NSEPQTDCSG QQPMESLASD  120
EETASLRLES SSPPLSDVSV QNDAIFQTGS FPDPFSEFGS SSFVPEFSDF PSFDDFSRDF  180
FMPELPSFDY GEENVDGMII QDSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1618771474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G225000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007138631.11e-150hypothetical protein PHAVU_009G225000g
SwissprotQ84QC21e-50ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLV7AZA11e-149V7AZA1_PHAVU; Uncharacterized protein
STRINGXP_007138631.11e-149(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.17e-45ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]