PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G162000.1
Common NamePHAVU_009G162000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 496aa    MW: 54467.2 Da    PI: 6.631
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G162000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11311353754
                         HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                         ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Phvul.009G162000.1 311 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 353
                         79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764304353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16307371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9310353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.77E-12311357No hitNo description
Gene3DG3DSA:4.10.280.108.5E-16311367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.56E-6424484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MMSRMNSVCW MEEREDENNS GSWARNKPNT TIIATDTTTT SKPTTTAAAA AFVENNTTRD  60
DLASLCAFKP MLELDDEWYI SSHHQHNNHH HQDMTFSPTF PDSDNLLLPA VDSSSSSSVF  120
TNLDPSSSHL HYFLPPKPPT LSSLLNPFDI PFLDPQASSS FPLLPSAHFP SDTPPQTATA  180
TAFAGFHSLD DGSSKPLFQQ RSKILRPLES LTPSGAPPTL FQKRAALRKN MSGGEGSEKK  240
RKEREEVVED VSFDGSGLNY DSDDFTEINN NGGKVDEGGA KKGGNSSNAN SSVTGLDQKG  300
KRKGMPAKNL MAERRRRKKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINDL  360
HNELESTSAS SSLTPSSNFH PLTPTPPTLP SRIKEELCPT SLPSPNAQPA RVEVRLREGR  420
AVNIHMFCAR KPGLLLSTMR AMDNLGLDIQ QAVISCFNGF AMDIFRAEQC KEGQDVHPEQ  480
IKAVLLDSAG YSGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300318KRKGMPAKNLMAERRRRKK
2312319ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137863.10.0hypothetical protein PHAVU_009G162000g
SwissprotQ9LSE21e-127ICE1_ARATH; Transcription factor ICE1
TrEMBLV7AW350.0V7AW35_PHAVU; Uncharacterized protein
STRINGGLYMA04G37750.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-109bHLH family protein