PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G161000.1
Common NamePHAVU_009G161000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 259aa    MW: 28835.2 Da    PI: 6.6087
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G161000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.71.8e-2082131255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++aa++k++g
  Phvul.009G161000.1  82 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAALAYDAAALKFKG 131
                         7********.**********94....45************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-3281140IPR001471AP2/ERF domain
SuperFamilySSF541713.53E-2282140IPR016177DNA-binding domain
PfamPF008473.2E-1482131IPR001471AP2/ERF domain
PROSITE profilePS5103224.86982139IPR001471AP2/ERF domain
SMARTSM003807.0E-3782145IPR001471AP2/ERF domain
CDDcd000186.89E-2182138No hitNo description
PRINTSPR003671.3E-118394IPR001471AP2/ERF domain
PRINTSPR003671.3E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MERRSHSTER EEEHDLFPIY SERSQQDMSA MVSALTQVMG GSNDSLQHHE HLLTSSNNTS  60
SQNNNEQSQV PQQDQGSGRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEAAAL  120
AYDAAALKFK GSKAKLNFSE RVQGTDEFGY LTNQPLSSTT TSNDQASNPV APHFTQETYS  180
PTHYYHPQQI MGTAGSSSFN NQDMLRFFGG DMFVSSQPAA SSSSSTSLSQ QQEEFLRFST  240
QFGGSSSEPP RNWRGDGY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2581142466ATERF1
3gcc_A6e-2581142466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G161000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150351e-169AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137849.10.0hypothetical protein PHAVU_009G161000g
SwissprotQ9FH543e-55EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLV7AZ100.0V7AZ10_PHAVU; Uncharacterized protein
STRINGXP_007137849.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.12e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]