PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G156300.1
Common NamePHAVU_009G156300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 204aa    MW: 23676.4 Da    PI: 4.4837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G156300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.46.1e-3281271128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGf F+Ptdeelv ++L  k++  +++  ++i+++d  +++Pw+L+ k+  + +++yfF+k +        +nr++++g Wk+ g +++
  Phvul.009G156300.1   8 LPPGFFFSPTDEELVLHFLYCKASLIPCHP-NIIPDLDFSRLHPWELNGKALLSGNQYYFFTKVN--------ENRTMENGCWKEIGVTEP 89 
                         79*************************999.89**************966667789999999874........589999************ PP

                 NAM  92 vlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         ++s+ +e+vg+kk Lvf+ g +ap+g++t+Wvm+ey++
  Phvul.009G156300.1  90 IFSTFDEKVGTKKYLVFHIGeEAPHGTETNWVMQEYHI 127
                         ****9*************77699*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-415160IPR003441NAC domain
PROSITE profilePS5100538.4478161IPR003441NAC domain
PfamPF023657.4E-209127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MEDASFNLPP GFFFSPTDEE LVLHFLYCKA SLIPCHPNII PDLDFSRLHP WELNGKALLS  60
GNQYYFFTKV NENRTMENGC WKEIGVTEPI FSTFDEKVGT KKYLVFHIGE EAPHGTETNW  120
VMQEYHICSS GFDTASYRSS RRRRKHDQSW SKWVLCRVYE KMRSEQGVNS YSDDDDESGS  180
ELSWLDEVYL SLDDDLEEIV MPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-31416616173NAC domain-containing protein 19
3swm_B1e-31416616173NAC domain-containing protein 19
3swm_C1e-31416616173NAC domain-containing protein 19
3swm_D1e-31416616173NAC domain-containing protein 19
3swp_A1e-31416616173NAC domain-containing protein 19
3swp_B1e-31416616173NAC domain-containing protein 19
3swp_C1e-31416616173NAC domain-containing protein 19
3swp_D1e-31416616173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.009G156300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312090.0KT031209.1 Glycine max clone HN_CCL_4 NAC transcription factor (Glyma04g38990.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137797.11e-152hypothetical protein PHAVU_009G156300g
SwissprotQ8GWK65e-56NC104_ARATH; NAC domain-containing protein 104
TrEMBLV7AZY11e-151V7AZY1_PHAVU; Uncharacterized protein
STRINGXP_007137797.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-51xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]