PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.009G026200.1
Common NamePHAVU_009G026200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARF
Protein Properties Length: 552aa    MW: 60630.3 Da    PI: 6.943
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.009G026200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23122223199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++       + ++ +   l+++d +g +We+++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F+ 
  Phvul.009G026200.1 122 FAKILTPSDANNGGGFSVPRFCADSIfppldydEDPPVQ--NLSVTDVHGFTWEFRHIFRGTPRRHLLTTGWSTFVNNKKLVAGDSVLFM- 209
                         89*********************999****997666666..6************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++ +++l+v+++r+
  Phvul.009G026200.1 210 -KNADKRLLVGIRRA 223
                         .6788889*****97 PP

2Auxin_resp873.6e-29272355183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a  ++ FevvY+P+a++seFvvk+e v +a+++ +  GmR+km++et+dss++++ +Gtv++vs  ++ +W  S+Wr+L+
  Phvul.009G026200.1 272 AAELAVRNMQFEVVYYPKAGWSEFVVKTEVVDAAMRIAWRDGMRVKMSVETDDSSRTTWfQGTVSAVSYQENGQWCSSPWRMLQ 355
                         577788999*************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.01E-29113235IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-35117234IPR015300DNA-binding pseudobarrel domain
CDDcd100175.68E-19121222No hitNo description
PfamPF023622.7E-21122223IPR003340B3 DNA binding domain
SMARTSM010195.5E-18122224IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548122224IPR003340B3 DNA binding domain
PfamPF065071.8E-26272355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MPRQPPPPPP QQPGALEAAV WQACAGPSVE IPKPNSMVYY FAQGHFDQAS SPPRNVSSAV  60
LARPFVTCNV VAVRFLADPL TDEVFAKMVL QPVANVFAAA AAPLHNHAAA PPQKDDKEVV  120
SFAKILTPSD ANNGGGFSVP RFCADSIFPP LDYDEDPPVQ NLSVTDVHGF TWEFRHIFRG  180
TPRRHLLTTG WSTFVNNKKL VAGDSVLFMK NADKRLLVGI RRATRFAPGR GSCVKLRLID  240
EEEEEEEEKE EVRGVFSRDG KGKLSAKEVV EAAELAVRNM QFEVVYYPKA GWSEFVVKTE  300
VVDAAMRIAW RDGMRVKMSV ETDDSSRTTW FQGTVSAVSY QENGQWCSSP WRMLQVTWDE  360
PEGLQNAKWV SPWQVELVST TPALHSAFPS PKRLRTANGS WVYANGEGDL FSMTGFTNPA  420
MGHLNQALWS YSTFPAGMQG ARHDVFSASS FSSYPRDMSH LGMCNSFGNS TFSRLNNLSI  480
DPSPDSRSSL HSCVIDTVGN HKSNSTKPVS DSFQLFGAVI RKEQPVQSSL TGTGCASTGD  540
KKALEYKGSY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-671537650388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136195.10.0hypothetical protein PHAVU_009G026200g
TrEMBLV7ARK70.0V7ARK7_PHAVU; Auxin response factor
STRINGGLYMA04G43350.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-137auxin response factor 17