PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G246000.1
Common NamePHAVU_008G246000g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 281aa    MW: 30843.2 Da    PI: 6.0961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G246000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-21124174155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GVr+++ +grW+AeIrdp   ++rkr +lg+f+taeeAa  +++a+ kl+g
  Phvul.008G246000.1 124 SKFRGVRQRP-WGRWAAEIRDP---NRRKRLWLGTFDTAEEAATEYDKAAVKLKG 174
                         79********.**********8...335************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381234.1E-867280IPR017392AP2/ERF transcription factor ERF/PTI6
PfamPF008474.3E-14124174IPR001471AP2/ERF domain
CDDcd000181.54E-33124182No hitNo description
SuperFamilySSF541711.83E-22124183IPR016177DNA-binding domain
PROSITE profilePS5103224.302125182IPR001471AP2/ERF domain
SMARTSM003801.8E-37125188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-31125183IPR001471AP2/ERF domain
PRINTSPR003674.3E-10126137IPR001471AP2/ERF domain
PRINTSPR003674.3E-10148164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSVHSTVNLH PMNLATPNSH FDDNPPCKTK TKTQKRLLRI IITDHDATDS DSDDEQQQNN  60
PKARKVKREI TQISMHLPLP DNSFSSCSYS SASASVSTCS SEQASKCRKP KKPPPSSEAA  120
NGRSKFRGVR QRPWGRWAAE IRDPNRRKRL WLGTFDTAEE AATEYDKAAV KLKGPNAVTN  180
FPLTTPPPAA ASPFAAIDSF STDGGASYSD LVASPTSVLT YDCDSTPFDS FPYGNVDALG  240
FHIDAPLSLA DVDVALTCHH GKEEEAFDEF DLDEFMKWPY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20126183361ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G246000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142025.10.0hypothetical protein PHAVU_008G246000g
TrEMBLV7B8630.0V7B863_PHAVU; Uncharacterized protein
STRINGXP_007142025.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55853252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.11e-27cytokinin response factor 4