PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G192500.1
Common NamePHAVU_008G192500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 222aa    MW: 24265.9 Da    PI: 4.9526
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G192500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.71.9e-387104197
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC++dCv+apyf  +q + +fa+vhk++Gasnv+kll++lp ++r+da++++ yeA ar++dP+yG+v++i +lqqq+ +l
  Phvul.008G192500.1   7 SCGACKFLRRKCTSDCVFAPYFSYDQaSTHFAAVHKIYGASNVSKLLSHLPIQNRSDAATTISYEALARVHDPIYGCVAHIYALQQQVVNL 97 
                         6***********************99779************************************************************** PP

              DUF260  91 kaelall 97 
                         ++e+++l
  Phvul.008G192500.1  98 QEEIDAL 104
                         ***9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7066108IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-377104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCTS DCVFAPYFSY DQASTHFAAV HKIYGASNVS KLLSHLPIQN  60
RSDAATTISY EALARVHDPI YGCVAHIYAL QQQVVNLQEE IDALGSIVAN STVSVVNSGT  120
VEAPMYSDNG IPYNILQHDA TRTQYFQNNL ANFLSQDGSA TVCQSLDSQM NIELPNAHVE  180
EPSFGDSNSN PLEQFLSGID QEVFVNHPWF KHNADIKGSE Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-3731037106LOB family transfactor Ramosa2.1
5ly0_B5e-3731037106LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G192500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17259263}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-168AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007141403.11e-166hypothetical protein PHAVU_008G192500g
SwissprotQ9LHS82e-54LBD33_ARATH; LOB domain-containing protein 33
TrEMBLV7B6611e-165V7B661_PHAVU; Uncharacterized protein
STRINGXP_007141403.11e-165(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.16e-55LOB domain-containing protein 33
Publications ? help Back to Top
  1. Bargmann BO,Birnbaum KD,Brenner ED
    An undergraduate study of two transcription factors that promote lateral root formation.
    Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45
    [PMID:24615800]