PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G098900.1
Common NamePHAVU_008G098900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 158aa    MW: 17505.3 Da    PI: 9.4422
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G098900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.1e-183382255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  Phvul.008G098900.1 33 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYATPVAAARAYDTAVFYLRG 82
                        69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.56E-213391IPR016177DNA-binding domain
PROSITE profilePS5103222.0623390IPR001471AP2/ERF domain
SMARTSM003804.0E-383396IPR001471AP2/ERF domain
PRINTSPR003677.0E-123445IPR001471AP2/ERF domain
CDDcd000189.29E-283492No hitNo description
Gene3DG3DSA:3.30.730.103.1E-303491IPR001471AP2/ERF domain
PfamPF008473.4E-113482IPR001471AP2/ERF domain
PRINTSPR003677.0E-127292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MEGEGLGDCC SSNSTTTRNS QKRKQQQQDQ DKPYRGIRMR KWGKWVAEIR EPNKRSRIWL  60
GSYATPVAAA RAYDTAVFYL RGPSARLNFP ELLSQDDDVS TQQGNMSADS IRKKATQVGA  120
RVDALQTALQ PSSSHSANSS HVSSDKPDLN EYPKPED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-153090263ATERF1
3gcc_A2e-153090263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G098900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX1513970.0KX151397.1 Phaseolus vulgaris genotype BAT 477 DREB5A protein (DREB5A) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140279.11e-115hypothetical protein PHAVU_008G098900g
SwissprotQ8LC304e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLV7B5Z71e-113V7B5Z7_PHAVU; Uncharacterized protein
STRINGXP_007140279.11e-114(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-48DREB and EAR motif protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]