PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G075900.1
Common NamePHAVU_008G075900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family LBD
Protein Properties Length: 226aa    MW: 23869.1 Da    PI: 8.6026
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G075900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.81e-3914113199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC ++C++apyf aeq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ r+rdPvyG+v++i++lqqq+ +l
  Phvul.008G075900.1  14 PCGACKFLRRKCIPGCIFAPYFDAEQgTNHFAAVHKVFGASNVSKLLLSIPVHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVNL 104
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallke 99 
                         +ael++l+ 
  Phvul.008G075900.1 105 QAELSYLQG 113
                         ****99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.71513115IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-3914112IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MSGSGAGSST TGSPCGACKF LRRKCIPGCI FAPYFDAEQG TNHFAAVHKV FGASNVSKLL  60
LSIPVHKRLD AVITICYEAQ SRLRDPVYGC VSHIFALQQQ VVNLQAELSY LQGHFAQMEV  120
PHPPPPPLTQ SVATPRFSVS DLPSTTAAAA ATATYDLSSL FDPTGQVSWA MQHRAMDPRQ  180
YMGHPPSAST RVNVQAVAGD LSHRHGSPPS PPASSNASPS LSLSK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-99AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139994.11e-165hypothetical protein PHAVU_008G075900g
SwissprotO221312e-74LBD18_ARATH; LOB domain-containing protein 18
TrEMBLV7B5391e-165V7B539_PHAVU; Uncharacterized protein
STRINGGLYMA09G40500.16e-97(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.11e-65LOB domain-containing protein 18