PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G046500.1
Common NamePHAVU_008G046500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 182aa    MW: 20177.6 Da    PI: 8.4716
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G046500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.7e-1773123155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GVr++   g+++AeI+dp   +++ r++lg++ t+eeAa a+++a  k++g
  Phvul.008G046500.1  73 SRYRGVRRRA-HGKFAAEIKDP---NRSNRIWLGTYHTEEEAALAYDNAVFKIRG 123
                         79*****887.8*********8...335************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-2073132IPR016177DNA-binding domain
CDDcd000182.00E-2773133No hitNo description
PfamPF008476.8E-1273123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.8E-2974132IPR001471AP2/ERF domain
SMARTSM003802.8E-3174137IPR001471AP2/ERF domain
PROSITE profilePS5103221.89174131IPR001471AP2/ERF domain
PRINTSPR003671.6E-77586IPR001471AP2/ERF domain
PRINTSPR003671.6E-797113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MKAPHQVVVT NNNKSISKSE MDTEFDMIFS ETIEHYMVDD EACGLKNDVL VSNESSLSEN  60
GGGKVEEEVP RGSRYRGVRR RAHGKFAAEI KDPNRSNRIW LGTYHTEEEA ALAYDNAVFK  120
IRGSKAKLNF PHLIPPLDAS TIHVADPPSS SSTPEDRSEG SRKRKGVAGL LNKLARERNR  180
I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2171131263ATERF1
3gcc_A3e-2171131263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G046500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139637.11e-132hypothetical protein PHAVU_008G046500g
SwissprotQ404763e-27ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLV7B5A51e-131V7B5A5_PHAVU; Uncharacterized protein
STRINGXP_007139637.11e-132(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2122744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.12e-20ethylene-responsive element binding factor 13