PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G046400.1
Common NamePHAVU_008G046400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 208aa    MW: 23170.9 Da    PI: 9.6691
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G046400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2077127255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp++ng  +r++lg+f+t+++Aa a+++a+ k++g
  Phvul.008G046400.1  77 HYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTFDTEKKAALAYDKAAFKMRG 127
                         8********.***********9998..**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.0E-3276136IPR001471AP2/ERF domain
CDDcd000185.21E-3176137No hitNo description
SuperFamilySSF541712.48E-2377136IPR016177DNA-binding domain
PROSITE profilePS5103224.01277135IPR001471AP2/ERF domain
PfamPF008472.0E-1477127IPR001471AP2/ERF domain
SMARTSM003801.2E-3877141IPR001471AP2/ERF domain
PRINTSPR003671.7E-137889IPR001471AP2/ERF domain
PRINTSPR003671.7E-13117137IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSSTTTDSDF AFLESVRQYL LGHDSINLMP ATTHQVASHD PLSNPKCNGD LENVIFRSED  60
ATAAVARHVH APQTWKHYRG VRRRPWGKFA AEIRDPKKNG ARVWLGTFDT EKKAALAYDK  120
AAFKMRGQKA KLNFPHLIDS DNCDTVSEPV METASERELS QSFQPSSPSS LCSDDSSESQ  180
GTKRRKKNLT DLLNKLAKNR SQAKVSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-3176140468ATERF1
3gcc_A1e-3176140468ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.008G046400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139636.11e-155hypothetical protein PHAVU_008G046400g
SwissprotQ404767e-35ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLV7B2591e-154V7B259_PHAVU; Uncharacterized protein
STRINGXP_007139636.11e-154(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-36ethylene-responsive element binding factor 13