PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G272800.1
Common NamePHAVU_007G272800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 150aa    MW: 16623.1 Da    PI: 6.5297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G272800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.4e-191969255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr+++ +g+++AeIrd      ++ +r +lg+f taeeAa+a+++a+ +++g
  Phvul.007G272800.1 19 KYRGVRRRP-WGKYAAEIRD----SmRHgQRLWLGTFTTAEEAARAYDRAAYAMRG 69
                        8********.**********....33236*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-241979IPR016177DNA-binding domain
PROSITE profilePS5103223.6441977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-311979IPR001471AP2/ERF domain
PfamPF008473.2E-141969IPR001471AP2/ERF domain
SMARTSM003803.9E-361983IPR001471AP2/ERF domain
CDDcd000182.98E-191979No hitNo description
PRINTSPR003673.5E-112031IPR001471AP2/ERF domain
PRINTSPR003673.5E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMNEEGSKGK SKDEEEHVKY RGVRRRPWGK YAAEIRDSMR HGQRLWLGTF TTAEEAARAY  60
DRAAYAMRGP FAVLNFPDQY PPSPAASSSS SSSVNASSSS SSVPSSSSHG RGRGRGRSEE  120
ASEVFEFEYF DDKLLEELLG YDDKNEHGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-341613411114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G272800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-116AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145842.11e-105hypothetical protein PHAVU_007G272800g
SwissprotQ9LTC58e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV7BMM31e-104V7BMM3_PHAVU; Uncharacterized protein
STRINGXP_007145842.11e-105(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04370.11e-23Ethylene-responsive element binding factor 14
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]