PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G241600.1
Common NamePHAVU_007G241600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 269aa    MW: 29731.9 Da    PI: 8.573
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G241600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20126176255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+++AeIrdp   + k  r++lg+f+ta eAaka+++a+ k++g
  Phvul.007G241600.1 126 HYRGVRRRP-WGKFAAEIRDP---NrKGSRVWLGTFDTAIEAAKAYDKAAFKMRG 176
                         8********.**********9...6566*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.15E-32125184No hitNo description
Gene3DG3DSA:3.30.730.106.6E-33125185IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23126186IPR016177DNA-binding domain
PfamPF008477.8E-15126176IPR001471AP2/ERF domain
PROSITE profilePS5103224.474126184IPR001471AP2/ERF domain
SMARTSM003806.5E-38126190IPR001471AP2/ERF domain
PRINTSPR003671.4E-13127138IPR001471AP2/ERF domain
PRINTSPR003671.4E-13166186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQTFEPNFTF CIPNTLGASV SPSDICITDY LLPQELQFQV HMSNNNNTQM PQTTSFSKPP  60
RSSSLSNRKP SLKNIKIPSL TSGLVMPQHM ETTAKTTLGA TMCNNSNQVS SSSSLDDGNN  120
SREDKHYRGV RRRPWGKFAA EIRDPNRKGS RVWLGTFDTA IEAAKAYDKA AFKMRGSKAI  180
LNFPLEVGEC EESVSCCIKV GVKREREEES ELIISNKDSN KVMKKEEPSP KGVCPLTPSC  240
WKGFWDTDLM GTIFSVPPLS PLSPLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-33125187163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-33125191470ATERF1
3gcc_A8e-33125191470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G241600.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007145468.10.0hypothetical protein PHAVU_007G241600g
SwissprotQ404781e-56ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLV7BHY80.0V7BHY8_PHAVU; Uncharacterized protein
STRINGXP_007145468.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.17e-36ERF family protein