PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G195600.1
Common NamePHAVU_007G195600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 217aa    MW: 24128 Da    PI: 7.1786
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G195600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000233658123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y C+ C++ F++   L  H+++H
  Phvul.007G195600.1 36 YACSFCKREFRSAQALGGHMNVH 58
                        89*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-63362No hitNo description
Gene3DG3DSA:3.30.160.607.6E-43461IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.1983663IPR007087Zinc finger, C2H2
SMARTSM003550.00923658IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-63659IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEGNYLNRNS TSTPQREDSF GFEEHTWGTS WPARNYACSF CKREFRSAQA LGGHMNVHRR  60
DRARLRSSLS SWVSECPKPN PSTKPNSPTL LPTSSSPSLL SDDPLNCAHP SPRCSPCLTL  120
SSSPFPASSS GDKKPRLTPS HSQFPLLSPQ SCEIKMMMSN NTRSGFSAEE EMKGCVEEED  180
HKGFKDNEKN ITLELGIGLL KHEEEKLDLE LRLGHF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-113158229superman protein
2l1o_A2e-113158229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G195600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144930.11e-158hypothetical protein PHAVU_007G195600g
TrEMBLV7BGA31e-156V7BGA3_PHAVU; Uncharacterized protein
STRINGXP_007144930.11e-157(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.13e-14C2H2 family protein