PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G174800.1
Common NamePHAVU_007G174800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 358aa    MW: 41497.9 Da    PI: 5.1554
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G174800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.98.7e-35441352102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d+ ++++isws++g+sfvv+d++ f+ ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         w+F+++ F +g+k+
  Phvul.007G174800.1  44 FLTKTFDVVDDPVTNHVISWSRDGTSFVVWDPHAFSASLLPRYFKHNNFSSFVRQLNTYGFRKIDPDR---------WQFANEGFIRGQKQ 125
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k 
  Phvul.007G174800.1 126 LLRSIRRRKA 135
                         *******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.18E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.7E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.0E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-194467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-198294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.6E-1995107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDYMYPVKEE YLESSAPSSS SYQLGSEYPP KPIEGLRDTG PPPFLTKTFD VVDDPVTNHV  60
ISWSRDGTSF VVWDPHAFSA SLLPRYFKHN NFSSFVRQLN TYGFRKIDPD RWQFANEGFI  120
RGQKQLLRSI RRRKAPSQLT QGHHCVEVGR FEIDKEVDRL KHDKIVLMME LMNLRQQQQK  180
ARMYIKEMEQ RLQVTEIKQK HMMAFLSRAI KNPAFLHQLQ QKENRKDLEE ALTKKRRQIE  240
QGARGIGESS SGGEERSRVK VEALEFGDCD CDLGVSELEM LAMEMQGFGQ GRIDREVEPE  300
ALESQERLDR VLDEEFWEEL LISEKFEGRL DIPTTEDNDE DVVNILANEL GCLYSSH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-244213318120Heat shock factor protein 1
5d5u_B4e-244213327129Heat shock factor protein 1
5d5v_B4e-244213327129Heat shock factor protein 1
5d5v_D4e-244213327129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144664.10.0hypothetical protein PHAVU_007G174800g
RefseqXP_007144665.10.0hypothetical protein PHAVU_007G174800g
SwissprotQ9LUH81e-106HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLV7BFN10.0V7BFN1_PHAVU; Uncharacterized protein
STRINGGLYMA10G03530.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-105heat shock transcription factor A6B