PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G139600.1
Common NamePHAVU_007G139600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 334aa    MW: 37013.9 Da    PI: 6.9405
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G139600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00078146168123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Phvul.007G139600.1 146 YECKTCNRTFPSFQALGGHRASH 168
                         99**********99999998887 PP

2zf-C2H213.10.00028221243123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Phvul.007G139600.1 221 HECSICGAEFTSGQALGGHMRRH 243
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-13145170IPR007087Zinc finger, C2H2
SuperFamilySSF576678.0E-9145168No hitNo description
PROSITE profilePS5015710.637146173IPR007087Zinc finger, C2H2
SMARTSM003550.052146168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576678.0E-9216243No hitNo description
PfamPF139124.9E-13220245IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723221243IPR007087Zinc finger, C2H2
SMARTSM003550.01221243IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEAPEELSVG GSKDHTNIVK GKRTKRVRPQ SPIPFVTANS STGEGEGEGQ DCCNVDDNTN  60
TTTNKNYDIN NNNNNSSPTT SSAGLQDSTD EEEDMANCLI LLAQGQSRES HKHAEEDVGM  120
NYAKYSSRKF LEAATLGSSR AGYYVYECKT CNRTFPSFQA LGGHRASHKK PKAMMAIGQE  180
KKQQHLLSSD EEEFQLKTNN KSPFSLQLNT KGNLYNKSKV HECSICGAEF TSGQALGGHM  240
RRHRAPVGIP TTLSFTPLAL EPEEDHPRKK RNMLNLELDL NLPAPEDDQR ESKFSFQSKQ  300
QQQHGQKQQQ QQQQQPPQTS LVLTAPALVD CHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G139600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144239.10.0hypothetical protein PHAVU_007G139600g
TrEMBLV7BH810.0V7BH81_PHAVU; Uncharacterized protein
STRINGXP_007144239.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.12e-69C2H2 family protein