PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G100500.1
Common NamePHAVU_007G100500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 343aa    MW: 38928.5 Da    PI: 9.5404
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G100500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.6e-1754147277
            trihelix   2 WtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 
                         Wt qe+l Li+a++ ++er  ++                   + + +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k +++
  Phvul.007G100500.1  54 WTIQETLILITAKKLDDERRLKTPhdptrpacssttsssartSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYESKSQQQ 144
                         *************9444444433223444455555566666699******************************************97544 PP

            trihelix  75 sss 77 
                         +++
  Phvul.007G100500.1 145 QHQ 147
                         433 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.4E-545130IPR009057Homeodomain-like
PROSITE profilePS500906.58646128IPR017877Myb-like domain
PfamPF138375.8E-1153144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSDPSTTPLP HPPLLPEAHR QPLHHHPLPL IQGATAAAPS SSSSLAREYR KGNWTIQETL  60
ILITAKKLDD ERRLKTPHDP TRPACSSTTS SSARTSGELR WKWVENYCWS HGCLRSQNQC  120
NDKWDNLLRD YKKVRDYESK SQQQQHQQSH EIKHFPSYWT LNKQQRKEQN LPSNMVYEVY  180
HAITEVLQRK QTQPQLQSQT QTQRQPQQQP PVALITVSSP PPPPPPPVSS TTPAVSERSE  240
SSGTEHSEDD ADDGSESKRR KVKNLGSSIM RSASVLARAL RSCEEKKEKR HRELIELEQR  300
RLQMEEARDE VHRQGIATLV AAVTNLSGAI QSLINSERHG QR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G100500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007143775.10.0hypothetical protein PHAVU_007G100500g
TrEMBLV7BD780.0V7BD78_PHAVU; Uncharacterized protein
STRINGXP_007143775.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68043242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.11e-41Trihelix family protein