PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G002900.1
Common NamePHAVU_007G002900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family RAV
Protein Properties Length: 321aa    MW: 36796.5 Da    PI: 6.2506
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G002900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.57.7e-093682254
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54
                        ++kGV    ++g W A+I+       +  r++lg+f ++ eAa a++ a  kl+
  Phvul.007G002900.1 36 KFKGVV-PQQNGNWGAQIYA------NhHRIWLGTFKSEREAAMAYDSASIKLR 82
                        789996.666899****999......44**********99*********99997 PP

2B3825.6e-26158251183
                         EEEE-..-HHHHTT-EE--HHH.HTT.........---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                         f+k+ltpsdv+k++rlv+pkk+a ++         g++++   ++++ ++d+  r W+++++y+k+s++yv+t+GW++Fvk+++Lk++D++
  Phvul.007G002900.1 158 FQKELTPSDVGKLNRLVIPKKHAVSYfppvceiaeGHEEHgsVDVEVAFYDRLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDTI 248
                         99*******************************984444422457889999***************************************9 PP

                         EEE CS
                  B3  81 vFk 83 
                          F 
  Phvul.007G002900.1 249 AFF 251
                         985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.20E-203593No hitNo description
SuperFamilySSF541713.27E-143692IPR016177DNA-binding domain
SMARTSM003804.9E-173697IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-153691IPR001471AP2/ERF domain
PROSITE profilePS5103216.4633691IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.3E-29155251IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-26156254IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-23157252No hitNo description
PROSITE profilePS5086311.011158276IPR003340B3 DNA binding domain
PfamPF023625.2E-23158251IPR003340B3 DNA binding domain
SMARTSM010199.3E-18158262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNRNKESYSD CCGEINSAAF DAMQEENRAA GSLFQKFKGV VPQQNGNWGA QIYANHHRIW  60
LGTFKSEREA AMAYDSASIK LRSGESHRNF PWDDQTVQEP EFQSHYSTEA MLSMIRDGTY  120
ASHFATFLTT RKTQQGVVAK HVTLKGDEEE KLCCTLLFQK ELTPSDVGKL NRLVIPKKHA  180
VSYFPPVCEI AEGHEEHGSV DVEVAFYDRL MRLWKFRYCY WKSSQSYVFT RGWNRFVKDK  240
KLKAKDTIAF FMCEPVDWRK GGEGEAFGLI DVIYNSDDER GLKCFGELVC SEEEEDTKEE  300
TIEKDLNAQK GLRLFGVFIK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-261572607112B3 domain-containing transcription factor NGA1
5os9_B1e-261572607112B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.007G002900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007142618.10.0hypothetical protein PHAVU_007G002900g
SwissprotQ9C6888e-95RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLV7B9R10.0V7B9R1_PHAVU; Uncharacterized protein
STRINGXP_007142618.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.15e-97RAV family protein