PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G208600.1
Common NamePHAVU_006G208600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 190aa    MW: 21779.3 Da    PI: 4.9335
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G208600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1241.2e-3881271128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeelvv++L++k++  +++  +vi+++++y+++Pw+L+ ++ ae ++wy++s+r         +nr+t +gyWk tg +++
  Phvul.006G208600.1   8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLEVYQYDPWELDGRALAEGNQWYYYSRR--------TPNRVTGNGYWKPTGMEEP 89 
                         79*************************999.99**************977778899*****997........579**************** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+ +++ vg+kk +vf+ g+a +g kt+W+m+eyrl
  Phvul.006G208600.1  90 VVSSsNSKRVGMKKYFVFHVGEAATGIKTNWIMQEYRL 127
                         *99878889***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-506157IPR003441NAC domain
PROSITE profilePS5100547.278158IPR003441NAC domain
PfamPF023654.6E-239127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGDTNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDVI PDLEVYQYDP WELDGRALAE  60
GNQWYYYSRR TPNRVTGNGY WKPTGMEEPV VSSSNSKRVG MKKYFVFHVG EAATGIKTNW  120
IMQEYRLSDS ASSTRSSKRK PQPKADYNKW VICRVYERNG EDDNGTELSC LDEVFLSLDD  180
DLDEISLPN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-43415913166NO APICAL MERISTEM PROTEIN
1ut4_B3e-43415913166NO APICAL MERISTEM PROTEIN
1ut7_A3e-43415913166NO APICAL MERISTEM PROTEIN
1ut7_B3e-43415913166NO APICAL MERISTEM PROTEIN
3swm_A3e-43415916169NAC domain-containing protein 19
3swm_B3e-43415916169NAC domain-containing protein 19
3swm_C3e-43415916169NAC domain-containing protein 19
3swm_D3e-43415916169NAC domain-containing protein 19
3swp_A3e-43415916169NAC domain-containing protein 19
3swp_B3e-43415916169NAC domain-containing protein 19
3swp_C3e-43415916169NAC domain-containing protein 19
3swp_D3e-43415916169NAC domain-containing protein 19
4dul_A3e-43415913166NAC domain-containing protein 19
4dul_B3e-43415913166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G208600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619181e-154EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148437.11e-141hypothetical protein PHAVU_006G208600g
SwissprotQ8GWK66e-84NC104_ARATH; NAC domain-containing protein 104
TrEMBLV7BV341e-140V7BV34_PHAVU; Uncharacterized protein
STRINGXP_007148437.11e-140(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.18e-78xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]