PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G183200.1
Common NamePHAVU_006G183200g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 168aa    MW: 18196.7 Da    PI: 10.2221
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G183200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.8e-201363256
                 AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Phvul.006G183200.1 13 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 63
                        69*******.**********883....5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-341376IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-221370IPR016177DNA-binding domain
CDDcd000181.15E-291372No hitNo description
PROSITE profilePS5103222.7211370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-321370IPR001471AP2/ERF domain
PfamPF008472.8E-131362IPR001471AP2/ERF domain
PRINTSPR003674.7E-111425IPR001471AP2/ERF domain
PRINTSPR003674.7E-113652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MASSSSSASR EGHYRGVRKR PWGRYAAEIR DPWKKTRVWL GTFDTPEEAA LAYDGAARSL  60
RGAKAKTNFP PAPALCLDLN APSSDHRWPN VPSRTLVLTE FLHTAVLKDI EPPQPLPPAS  120
PALRRADVSV PLGGSVQVVD SSQTASFLGL VRRGIPIDLN EPPPVWL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-211370260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-211370563ATERF1
3gcc_A1e-211370563ATERF1
5wx9_A7e-21870972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G183200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148135.11e-117hypothetical protein PHAVU_006G183200g
SwissprotQ94ID62e-41ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLV7BQ761e-116V7BQ76_PHAVU; Uncharacterized protein
STRINGXP_007148135.11e-117(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-42ERF domain protein 12