PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G175300.1
Common NamePHAVU_006G175300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 365aa    MW: 41382.2 Da    PI: 8.3541
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G175300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.79.8e-3289142255
             G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         prlrWtpeLH++F++ave+LGG+e+AtPk +l+lm+v+gL+++hvkSHLQ+YR+
  Phvul.006G175300.1  89 PRLRWTPELHHSFMHAVERLGGQERATPKLVLQLMNVEGLSIAHVKSHLQMYRS 142
                         8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.6E-3085143IPR009057Homeodomain-like
PROSITE profilePS5129412.21985145IPR017930Myb domain
SuperFamilySSF466894.66E-1587143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2289144IPR006447Myb domain, plants
PfamPF002495.9E-990141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSEGHEIHSN EEASSGCSQK CSSFDLNTEA CSDDNTNGST EEGYELTTDE NNIEKVKDEG  60
TSANNGSSIS REGNERRGTV RQYVRSKMPR LRWTPELHHS FMHAVERLGG QERATPKLVL  120
QLMNVEGLSI AHVKSHLQMY RSKKLDEVGQ VLSQRSNQRV RSVMLHQSMS PQQHLKMGNG  180
GIILATQFDK HCHFPSLMQT PFPLSRSHAN DTNSRHQQWY INHQHFRKPI ASGQIQPKDT  240
PTRPSQLLDE KRWLPLEIIN NHQSKFQKLP AIVAPKTGSH AVQPTEWSFV NNTSVTEYIS  300
NKPNEPRNYS SSLKLEFDPP FRIKKDEQQL PDLQLSLSYT VASDGGKMNH YRETQEISTK  360
LSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-1890144458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G175300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-119AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148039.10.0hypothetical protein PHAVU_006G175300g
RefseqXP_007148040.10.0hypothetical protein PHAVU_006G175300g
TrEMBLV7BSN70.0V7BSN7_PHAVU; Uncharacterized protein
STRINGXP_007148039.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-35G2-like family protein