PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G173500.1
Common NamePHAVU_006G173500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 354aa    MW: 38026.3 Da    PI: 5.3894
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G173500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-182171256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                        ++ GVr+++ +grWvAeI+d      ++ r +lg+f+tae+Aa+a+++a+++l+g+
  Phvul.006G173500.1 21 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTFDTAEDAARAYDNAARALRGA 71
                        689******.7*********....4456*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-352184IPR001471AP2/ERF domain
PfamPF008471.8E-122170IPR001471AP2/ERF domain
PROSITE profilePS5103220.4952178IPR001471AP2/ERF domain
CDDcd000183.12E-312178No hitNo description
Gene3DG3DSA:3.30.730.107.0E-292178IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-202278IPR016177DNA-binding domain
PRINTSPR003671.1E-72233IPR001471AP2/ERF domain
PRINTSPR003671.1E-74460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGAMNDGNRS RKKSSSRGHH RFVGVRQRPS GRWVAEIKDS LQKVRLWLGT FDTAEDAARA  60
YDNAARALRG ANARTNFELP EATSGDASKR GDGGGSTFVP DCSEPFSFED VNEPGEEAEG  120
LLGALKAKLF DGKKGKFHFP FLTNSAASPV VHSGLVSRST QNICSAEKGL LLPSSPNKTV  180
LSSMNGTGAN PLLGVTSTLA TSNTCANSVV IPNHDHEGSV ARSFRVDTHQ LCQTPPDATW  240
FNEVAYELPW PTQFMSQVPD NSSLIASAGT LAWPLSGVTE STIDMACPDQ GSSSSNKSGQ  300
MMNMVNMQLP LVGDATEGIW TLEQQQFVQC ENNSWFSYNG SWDPLLYIPS ELA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1419771271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G173500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148016.10.0hypothetical protein PHAVU_006G173500g
TrEMBLV7BSI80.0V7BSI8_PHAVU; Uncharacterized protein
STRINGXP_007148016.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113333035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-13related to AP2 11