PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G152300.1
Common NamePHAVU_006G152300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NF-YC
Protein Properties Length: 235aa    MW: 25905.5 Da    PI: 4.9282
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G152300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1451.7e-45571592101
               NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                         l++fw+++   +++ +dfknh lPlarik+i+kad dvkm+saeaPv+++kace+fi+elt r+w +aeenkr+ l ksdia+a++++d++
  Phvul.006G152300.1  57 LEKFWAEKreeVKEISDFKNHCLPLARIKRIMKADGDVKMVSAEAPVVFAKACEMFIMELTKRAWDNAEENKRKILSKSDIASAMSKSDMY 147
                         889**999444556789************************************************************************** PP

               NF-YC  90 dflvdivprdel 101
                         dflvdivpr+++
  Phvul.006G152300.1 148 DFLVDIVPREDT 159
                         *********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.12E-3164150IPR009072Histone-fold
PfamPF008081.5E-2179141IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.4E-3679156IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDQKKGGEAE KEGRGKSKIE SDPMTAPPPS PLALTIGPSV PSSQPQPLPR ESLEQKLEKF  60
WAEKREEVKE ISDFKNHCLP LARIKRIMKA DGDVKMVSAE APVVFAKACE MFIMELTKRA  120
WDNAEENKRK ILSKSDIASA MSKSDMYDFL VDIVPREDTR PHPVFAGIPG TAIAPTYPIP  180
PHQHAADPQS GDPTMLMGMP ILDQNYPELQ TLPSPTPMSP NPEQENNHAP ESDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C9e-387315636119HapE
4g92_C9e-387315636119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147755.11e-172hypothetical protein PHAVU_006G152300g
SwissprotQ9ZVL35e-52NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLV7BP501e-172V7BP50_PHAVU; Uncharacterized protein
STRINGGLYMA08G15700.19e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-53nuclear factor Y, subunit C3