PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G134700.2
Common NamePHR1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family G2-like
Protein Properties Length: 328aa    MW: 35556.6 Da    PI: 6.7557
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G134700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.7e-3449103155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Phvul.006G134700.2  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                         79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.81346106IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-3248104IPR009057Homeodomain-like
SuperFamilySSF466899.14E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.3E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23136182IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MYHSKNVPSA SLVGGNSLVH GQHIDCGGSA MDHGNGGNSH SNNSNLNSKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDEGKKADK  120
KETGDVLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ  180
QRLSGVLSEA PDTGVVAVVP GDVCQEPDTD PSTPDPEKAA KDRVPAKSLS GESFSSHHEP  240
LTPDSGCHGG SPADSPKGER STKKQRLNMD GSYSKQDMVL PLQILESSMS SYQHPNTVFL  300
GQEQFDPSMG MSSRSGEELD KVGGSNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-2449106158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.006G134700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5007630.0EU500763.1 Phaseolus vulgaris phosphate high response (PHR1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027933129.10.0myb family transcription factor PHL7 isoform X1
RefseqXP_027933130.10.0myb family transcription factor PHL7 isoform X1
SwissprotQ9SJW01e-116PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLB4YEQ70.0B4YEQ7_PHAVU; Phosphate high response
STRINGGLYMA15G12940.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-96G2-like family protein
Publications ? help Back to Top
  1. Vald
    Essential role of MYB transcription factor: PvPHR1 and microRNA: PvmiR399 in phosphorus-deficiency signalling in common bean roots.
    Plant Cell Environ., 2008. 31(12): p. 1834-43
    [PMID:18771575]