PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G130300.1
Common NamePHAVU_005G130300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 297aa    MW: 31762.6 Da    PI: 8.2227
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G130300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067112134123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  Phvul.005G130300.1 112 YECKTCNRTFPSFQALGGHRASH 134
                         99**********99999998887 PP

2zf-C2H213.30.00025200222123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F++   L  H+r+H
  Phvul.005G130300.1 200 HECSICGSEFTSGQALGGHMRRH 222
                         78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-8111134No hitNo description
PfamPF139122.6E-13111136IPR007087Zinc finger, C2H2
SMARTSM003550.052112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.305112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SuperFamilySSF576671.3E-8195222No hitNo description
SMARTSM003550.019200222IPR015880Zinc finger, C2H2-like
PfamPF139122.2E-11200224IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325200227IPR007087Zinc finger, C2H2
PROSITE patternPS000280202222IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MATEEFVSCN NDPTNIAKGK RTKRRLRPLS PCVVTAVTAT AAAAMTSSCS SASGGGGGSF  60
SSVTLEEEEE DMANCLILLA QGRGGRDPLH HKELCDGVKT EKGGNKIEFY VYECKTCNRT  120
FPSFQALGGH RASHKKPKVE EKKSPPPALP PPPPSSSSQL FNFEETKQNH MKISPSVSLQ  180
LGCGNNRGGL NFHGNKSKIH ECSICGSEFT SGQALGGHMR RHRSSNNNNT NTNTVVQTTT  240
TTTSDGAVEV KPRNVLELDL NLPAPEDDLR DSKFQFPGNP NSMMLSAAPA LVGCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G130300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150141.10.0hypothetical protein PHAVU_005G130300g
TrEMBLV7BYN60.0V7BYN6_PHAVU; Uncharacterized protein
STRINGXP_007150141.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-50C2H2 family protein