PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G126300.1
Common NamePHAVU_005G126300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 247aa    MW: 27360.6 Da    PI: 6.1354
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G126300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-1670120155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr++    rWv+e+r+p   +k+ r++lg++ t+e+Aa+a++ a ++l+g
  Phvul.005G126300.1  70 PVYRGVRQRN-GDRWVCEVREP---NKKSRIWLGTYSTPEMAARAHDVAVLALKG 120
                         68*****999.9******9998...347**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1170120IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-2071130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-2971130IPR001471AP2/ERF domain
PROSITE profilePS5103221.50971128IPR001471AP2/ERF domain
SMARTSM003801.7E-2871134IPR001471AP2/ERF domain
CDDcd000181.30E-2872130No hitNo description
PRINTSPR003672.7E-77283IPR001471AP2/ERF domain
PRINTSPR003672.7E-794110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDVTMNRVET ECSYYYSLSS SPSPTSSQSQ LCNPNSPSDN SPFQAEATKP ALSSHKRKTG  60
RKKFRETRHP VYRGVRQRNG DRWVCEVREP NKKSRIWLGT YSTPEMAARA HDVAVLALKG  120
TSAVLNFPDS HSVSLLPVAK SSSAADIRLA AAKLSEVFPP SSSSTNDSRV KIETNPCSLE  180
AVADFANTLN NDDGFNKSMF FDEEAIYNMP GLLDSMAEGL LITPPSMRRF DWDEVDCETD  240
LTLWTY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G126300.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007150096.10.0hypothetical protein PHAVU_005G126300g
SwissprotA2WZI42e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLV7BYH60.0V7BYH6_PHAVU; Uncharacterized protein
STRINGXP_007150096.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.15e-55C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]